PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_15505.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 274aa    MW: 30660.8 Da    PI: 4.1125
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_15505.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.44.8e-204695255
                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             +++GVr+++ +g+W+AeIrdp +   ++r++lg+f taeeAa  +++a+ +l+g
  Rsa1.0_15505.1_g00001.1 46 KFRGVRQRP-WGKWAAEIRDPEQ---CRRIWLGTFETAEEAAVVYDNAAIRLRG 95
                             89*******.**********743...7*************************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.108.9E-3045103IPR001471AP2/ERF domain
PfamPF008477.1E-124695IPR001471AP2/ERF domain
PROSITE profilePS5103223.43346103IPR001471AP2/ERF domain
SMARTSM003804.2E-3746111IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-2146104IPR016177DNA-binding domain
CDDcd000182.94E-3346102No hitNo description
PRINTSPR003671.7E-104758IPR001471AP2/ERF domain
PRINTSPR003671.7E-106985IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
CNNNINITGV SMKERKRLSD ETQSPATNRH RRPLKVSIPS GQNGRKFRGV RQRPWGKWAA  60
EIRDPEQCRR IWLGTFETAE EAAVVYDNAA IRLRGPDALT NFSIPPQSPE EEESEPEQPV  120
IDKPESNITT TTTSSSESAE EFEHLSSPTS VLNILPLEDI QQPFKSAKPE PETSDAPWWH  180
TGFSSGSGEL DDSFPLDTPF LDSYFKESPP ESSIFDQPMG QIFSENDDIF DDMFLGGEIM  240
MNIGEEFTSS SSIKDIGSMF SDFDDSLISD LLVI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-2344110370ATERF1
3gcc_A3e-2344110370ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013665743.11e-154PREDICTED: ethylene-responsive transcription factor CRF3-like
SwissprotQ9FK121e-117CRF3_ARATH; Ethylene-responsive transcription factor CRF3
TrEMBLM4CFT61e-154M4CFT6_BRARP; Uncharacterized protein
STRINGBra003068.1-P1e-153(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22292576
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53290.11e-101cytokinin response factor 3